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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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This is the complete list of members for ymir::DiNucInsertionModel, including all inherited members.
| _arr (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | protected |
| _err_prob | ymir::AbstractInsertionModel | protected |
| _size (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | protected |
| aaProbability(const std::string &sequence, char first_char=NULL_CHAR) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| aaProbability(std::string::const_iterator start, seq_len_t sequence_len, char first_char=NULL_CHAR) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| aaProbability(std::string::const_reverse_iterator start, seq_len_t sequence_len, char first_char=NULL_CHAR) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| aaProbability(const std::string &sequence, seq_len_t first_nuc_pos, seq_len_t last_nuc_pos, char first_char=NULL_CHAR) const =0 (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | pure virtual |
| aaProbability(std::string::const_iterator start, seq_len_t first_nuc_pos, seq_len_t last_nuc_pos, char first_char=NULL_CHAR) const =0 (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | pure virtual |
| aaProbability(std::string::const_reverse_iterator start, seq_len_t first_nuc_pos, seq_len_t last_nuc_pos, char first_char=NULL_CHAR) const =0 (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | pure virtual |
| AbstractInsertionModel() (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| AbstractInsertionModel(uint8_t size, prob_t err_prob=0) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| AbstractInsertionModel(uint8_t size, std::vector< prob_t >::const_iterator start, prob_t err_prob=0) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| AbstractInsertionModel(const AbstractInsertionModel &other) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| DiNucInsertionModel() (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| DiNucInsertionModel(prob_t err_prob) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| DiNucInsertionModel(std::vector< prob_t >::const_iterator start, prob_t err_prob=0) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| DiNucInsertionModel(const event_matrix_t &mat, prob_t err_prob=0) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| DiNucInsertionModel(const DiNucInsertionModel &other) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| err_prob() const (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| generate(seq_len_t len, std::default_random_engine &rg, char first_char=NULL_CHAR, bool reverse=false) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inlinevirtual |
| nucProbability(const std::string &sequence, char first_char=NULL_CHAR, bool with_errors=false) const | ymir::DiNucInsertionModel | inlinevirtual |
| nucProbability(std::string::const_iterator start, seq_len_t sequence_len, char first_char=NULL_CHAR, bool with_errors=false) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inlinevirtual |
| nucProbability(std::string::const_reverse_iterator start, seq_len_t sequence_len, char first_char=NULL_CHAR, bool with_errors=false) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inlinevirtual |
| operator()(uint8_t row, uint8_t col) const (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| operator=(const DiNucInsertionModel &other) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inline |
| operator=(const AbstractInsertionModel &other) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| operator[](uint8_t index) const (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inline |
| prob_array_t typedef (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | |
| updateProbabilities(std::vector< prob_t >::const_iterator start) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inlineprotected |
| updateProbabilities(prob_t *start) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inlineprotected |
| updateProbabilities(std::vector< prob_t >::const_iterator start, prob_t err_prob) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inlineprotected |
| updateProbabilities(prob_t *start, prob_t err_prob) (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inlineprotected |
| updateProbabilitiesMatrix(const event_matrix_t &mat) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inlineprotected |
| updateProbabilitiesMatrix(const event_matrix_t &mat, prob_t err_prob) (defined in ymir::DiNucInsertionModel) | ymir::DiNucInsertionModel | inlineprotected |
| ~AbstractInsertionModel() (defined in ymir::AbstractInsertionModel) | ymir::AbstractInsertionModel | inlinevirtual |
1.8.11
