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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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This is the complete list of members for ymir::MAAG, including all inherited members.
| _chain (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | protected |
| _err_prob (defined in ymir::MAAG) | ymir::MAAG | protected |
| _errors | ymir::MAAG | protected |
| _events | ymir::MAAG | protected |
| _n_poses (defined in ymir::MAAG) | ymir::MAAG | protected |
| _recomb (defined in ymir::MAAG) | ymir::MAAG | protected |
| _seq_poses | ymir::MAAG | protected |
| _seq_type | ymir::MAAG | protected |
| _sequence | ymir::MAAG | protected |
| _values (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | protected |
| addNode() | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| addNode(matrix_ind_t n_matrices, dim_t rows, dim_t cols) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| at(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| at(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| chainSize() const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| cols(node_ind_t node_i) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| dim_t typedef | ymir::MultiMatrixChain< _Scalar > | protected |
| error_prob() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| errors(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| event_index(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| event_probability(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) const | ymir::MAAG | inline |
| fill(node_ind_t node, matrix_ind_t mat, _Scalar val=0) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| finish() (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| fullProbability(event_ind_t v_index, event_ind_t j_index) const | ymir::MAAG | inline |
| fullProbability(event_ind_t v_index, event_ind_t d_index, event_ind_t j_index) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| fullProbability(MAAGComputeProbAction action=SUM_PROBABILITY) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| has_errors() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| has_events() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| initNode(node_ind_t node_i, matrix_ind_t n_matrices, dim_t rows, dim_t cols) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| is_vdj() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| is_vj() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| load(const std::string &filepath) (defined in ymir::MAAG) | ymir::MAAG | inline |
| load(std::istream &stream) (defined in ymir::MAAG) | ymir::MAAG | inline |
| MAAG() | ymir::MAAG | inline |
| MAAG(const MAAG &other) (defined in ymir::MAAG) | ymir::MAAG | inline |
| MAAG(MAAG &&other) (defined in ymir::MAAG) | ymir::MAAG | inline |
| MAAGBuilder (defined in ymir::MAAG) | ymir::MAAG | friend |
| MAAGForwardBackwardAlgorithm (defined in ymir::MAAG) | ymir::MAAG | friend |
| matrix(node_ind_t node, matrix_ind_t mat) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| matrix_ind_t typedef | ymir::MultiMatrixChain< _Scalar > | protected |
| matrix_t typedef | ymir::MultiMatrixChain< _Scalar > | protected |
| MultiMatrixChain() (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| n_poses() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| nDiv() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| nJoi() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| node_ind_t typedef | ymir::MultiMatrixChain< _Scalar > | protected |
| nodeColumns(node_ind_t node_i) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| nodeRows(node_ind_t node_i) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| nodeSize(node_ind_t node_i) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| nVar() const | ymir::MAAG | inline |
| operator()(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| operator()(node_ind_t node_i, matrix_ind_t mat_i, dim_t row, dim_t col) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| operator=(const MAAG &other) (defined in ymir::MAAG) | ymir::MAAG | inline |
| operator=(MAAG &&other) (defined in ymir::MAAG) | ymir::MAAG | inline |
| operator[](size_t index) const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| position(seq_len_t i) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| recombination() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| resize(node_ind_t n_nodes) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| rows(node_ind_t node_i) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| save(const std::string &filepath) const | ymir::MAAG | inline |
| save(std::ostream &stream) const (defined in ymir::MAAG) | ymir::MAAG | inline |
| sequence() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| sequence_type() const (defined in ymir::MAAG) | ymir::MAAG | inline |
| swap(MultiMatrixChain &other) (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| values_size() const (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotected |
| ~MAAG() | ymir::MAAG | inlinevirtual |
| ~MultiMatrixChain() (defined in ymir::MultiMatrixChain< _Scalar >) | ymir::MultiMatrixChain< _Scalar > | inlineprotectedvirtual |
1.8.11
