| _behaviour (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _builder (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _config (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _generator (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _genes (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _min_D_len (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _model_path (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _param_vec (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _parser (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _recomb (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _status (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| _verbose (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | protected |
| buildGraphs(const ClonesetView &repertoire, MetadataMode save_metadata, ErrorMode error_mode, SequenceType sequence_type=NUCLEOTIDE, bool verbose=true) const | ymir::ProbabilisticAssemblingModel | inline |
| computeFullProbabilities(const ClonesetView &repertoire, ErrorMode error_mode, SequenceType sequence_type=NUCLEOTIDE, MAAGComputeProbAction action=SUM_PROBABILITY) const | ymir::ProbabilisticAssemblingModel | inline |
| event_probabilities() const | ymir::ProbabilisticAssemblingModel | inline |
| gene_segments() const | ymir::ProbabilisticAssemblingModel | inline |
| generateSequences(size_t count=1, bool verbose=true) const | ymir::ProbabilisticAssemblingModel | inline |
| make_assembler() | ymir::ProbabilisticAssemblingModel | inlineprotected |
| make_builder() | ymir::ProbabilisticAssemblingModel | inlineprotected |
| name() const (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | inline |
| parseModelConfig(const string &folderpath) | ymir::ProbabilisticAssemblingModel | inlineprotected |
| ProbabilisticAssemblingModel(const string &folderpath, ModelBehaviour behav=PREDEFINED) | ymir::ProbabilisticAssemblingModel | inline |
| ProbabilisticAssemblingModel() | ymir::ProbabilisticAssemblingModel | inlineprotected |
| recombination() const (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | inline |
| save(const string &folderpath) const | ymir::ProbabilisticAssemblingModel | inline |
| save_vdj(const string &folderpath) const (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | inlineprotected |
| save_vj(const string &folderpath) const (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | inlineprotected |
| status() const | ymir::ProbabilisticAssemblingModel | inline |
| updateEventProbabilities(MAAGRepertoire *repertoire, bool verbose=true) | ymir::ProbabilisticAssemblingModel | inline |
| updateGeneUsage(const ClonesetView &cloneset) | ymir::ProbabilisticAssemblingModel | inline |
| updateModelParameterVector(const ModelParameterVector &vec) | ymir::ProbabilisticAssemblingModel | inline |
| ~ProbabilisticAssemblingModel() (defined in ymir::ProbabilisticAssemblingModel) | ymir::ProbabilisticAssemblingModel | inlinevirtual |
1.8.11
