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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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This is the complete list of members for ymir::VDJRecombinationGenes, including all inherited members.
| _D (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | protected |
| _J (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | protected |
| _V (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | protected |
| appendPalindromicNucleotides(GeneSegments gene, seq_len_t from_5_end=4, seq_len_t from_3_end=4) | ymir::VDJRecombinationGenes | inline |
| D() const (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| is_vdj() const (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| J() const (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| operator=(const VDJRecombinationGenes &other) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| V() const (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes() (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes(const std::string &v_segments_name, const std::string &v_segments_file, const std::string &j_segments_name, const std::string &j_segments_file, bool *is_V_ok=nullptr, bool *is_J_ok=nullptr) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes(const std::string &v_segments_name, const std::string &v_segments_file, const std::string &j_segments_name, const std::string &j_segments_file, const std::string &d_segments_name, const std::string &d_segments_file, bool *is_V_ok=nullptr, bool *is_J_ok=nullptr, bool *is_D_ok=nullptr) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes(const std::string &V_name, const std::vector< std::string > &V_alleles, const std::vector< std::string > &V_sequences, const std::string &J_name, const std::vector< std::string > &J_alleles, const std::vector< std::string > &J_sequences) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes(const std::string &V_name, const std::vector< std::string > &V_alleles, const std::vector< std::string > &V_sequences, const std::string &J_name, const std::vector< std::string > &J_alleles, const std::vector< std::string > &J_sequences, const std::string &D_name, const std::vector< std::string > &D_alleles, const std::vector< std::string > &D_sequences) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| VDJRecombinationGenes(const VDJRecombinationGenes &other) (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
| write(const std::string &v_segments_file="vsegments.txt", const std::string &j_segments_file="jsegments.txt", const std::string &d_segments_file="dsegments.txt") const (defined in ymir::VDJRecombinationGenes) | ymir::VDJRecombinationGenes | inline |
1.8.11
