ymir::GappedAlignmentVector Member List

This is the complete list of members for ymir::GappedAlignmentVector, including all inherited members.

_data (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	protected
_events	ymir::AlignmentVectorBase	protected
_starts (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	protected
addAlignment(seg_index_t id, seq_len_t p_start, seq_len_t t_start, const events_storage_t &vec) (defined in ymir::GappedAlignmentVector)	ymir::GappedAlignmentVector	inline
AlignmentVectorBase() (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
clear() (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
default_events_reserve_size (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	static
default_start_reserve_size (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	static
events_storage_t typedef (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase
extend(const AlignmentVectorBase &other) (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
finish() (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
GappedAlignmentVector() (defined in ymir::GappedAlignmentVector)	ymir::GappedAlignmentVector	inline
id(seq_len_t i) const (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
isDel(seq_len_t i, seq_len_t j) const (defined in ymir::GappedAlignmentVector)	ymir::GappedAlignmentVector	inline
isIns(seq_len_t i, seq_len_t j) const (defined in ymir::GappedAlignmentVector)	ymir::GappedAlignmentVector	inline
isMatch(seq_len_t i, seq_len_t j) const	ymir::GappedAlignmentVector	inline
isMismatch(seq_len_t i, seq_len_t j) const (defined in ymir::GappedAlignmentVector)	ymir::GappedAlignmentVector	inline
len(seq_len_t i) const (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
operator!=(const AlignmentVectorBase &other) (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
operator==(const AlignmentVectorBase &other) (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
pattern_start(seq_len_t i) const (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
size() const (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline
text_start(seq_len_t i) const (defined in ymir::AlignmentVectorBase)	ymir::AlignmentVectorBase	inline