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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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Ymir
.9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
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This is the complete list of members for ymir::VDJAlignmentBuilder, including all inherited members.
| _alignments | ymir::VDJAlignment | protected |
| _Dalign (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | protected |
| _Dseg (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | protected |
| _Jalign (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | protected |
| _n_D_alignments | ymir::VDJAlignment | protected |
| _n_Dalign (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | protected |
| _segments (defined in ymir::VDJAlignment) | ymir::VDJAlignment | protected |
| _Valign (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | protected |
| addAlignment(GeneSegments gene, seg_index_t seg_index, seq_len_t genestart, seq_len_t seqstart, seq_len_t alignment_len) (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| addDivAlignment(seg_index_t dseg, seq_len_t dstart, seq_len_t seqstart, seq_len_t alignment_len) (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| addDivAlignment(const NoGapAlignmentVector &vec) (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| addJoiAlignment(seg_index_t jseg, seq_len_t jstart, seq_len_t seqstart, seq_len_t alignment_len) (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| addJoiAlignment(const NoGapAlignmentVector &vec) (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| addVarAlignment(seg_index_t vseg, seq_len_t vstart, seq_len_t seqstart, seq_len_t alignment_len) | ymir::VDJAlignmentBuilder | inline |
| addVarAlignment(const NoGapAlignmentVector &vec) | ymir::VDJAlignmentBuilder | inline |
| buildAlignment() (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inline |
| getDiv(size_t index) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getDivGeneEnd(seg_index_t dgene, seg_index_t align_i) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getDivGeneStart(seg_index_t dgene, seg_index_t align_i) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getDivLen(seg_index_t dgene, seg_index_t align_i) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getDivSeqEnd(seg_index_t dgene, seg_index_t align_i) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getDivSeqStart(seg_index_t dgene, seg_index_t align_i) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoi(size_t index) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoiGeneEnd(seg_index_t jgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoiGeneStart(seg_index_t jgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoiLen(seg_index_t jgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoiSeqEnd(seg_index_t jgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getJoiSeqStart(seg_index_t jgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getVar(size_t index) const | ymir::VDJAlignment | inlineprotected |
| getVarGeneEnd(seg_index_t vgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getVarGeneStart(seg_index_t vgene) const | ymir::VDJAlignment | inlineprotected |
| getVarLen(seg_index_t vgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getVarSeqEnd(seg_index_t vgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| getVarSeqStart(seg_index_t vgene) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| isDivMismatch(seg_index_t dgene, seg_index_t align_i, seq_len_t pos) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| isJoiMismatch(seg_index_t jgene, seq_len_t pos) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| isVarMismatch(seg_index_t vgene, seq_len_t pos) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| n_D_alignments_storage_t typedef (defined in ymir::VDJAlignment) | ymir::VDJAlignment | protected |
| nDiv() const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| nJoi() const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| numDivAlignments(seg_index_t index) const | ymir::VDJAlignment | inlineprotected |
| numDivMismatches(seg_index_t dgene, seg_index_t align_i, seq_len_t start, seq_len_t end) const (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| nVar() const | ymir::VDJAlignment | inlineprotected |
| operator!=(const VDJAlignment &other) (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| operator==(const VDJAlignment &other) (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| segments_storage_t typedef (defined in ymir::VDJAlignment) | ymir::VDJAlignment | protected |
| VDJAlignment(const segments_storage_t &segments, const NoGapAlignmentVector &alignments, const n_D_alignments_storage_t &n_D_alignments) (defined in ymir::VDJAlignment) | ymir::VDJAlignment | inlineprotected |
| VDJAlignment() | ymir::VDJAlignment | inlineprotected |
| VDJAlignmentBuilder() | ymir::VDJAlignmentBuilder | inline |
| ~VDJAlignment() | ymir::VDJAlignment | inlineprotectedvirtual |
| ~VDJAlignmentBuilder() (defined in ymir::VDJAlignmentBuilder) | ymir::VDJAlignmentBuilder | inlinevirtual |
1.8.11
