Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
Public Types | Public Member Functions | Static Public Attributes | List of all members
ymir::AlignmentMatrixBase< AlignmentType > Struct Template Reference

Public Types

typedef std::vector< bool > bit_storage_t
 
typedef std::vector< alignment_score_t > score_storage_t
 

Public Member Functions

 AlignmentMatrixBase (seg_index_t gene, const sequence_t &pattern, const sequence_t &text)
 
void reinit (seg_index_t gene, const sequence_t &pattern, const sequence_t &text)
 
void setStart (seq_len_t row, seq_len_t col)
 
alignment_score_t getBestAlignment (AlignmentType *vec, const sequence_t &pattern, const sequence_t &text) const
 
alignment_score_t score (seq_len_t row, seq_len_t col) const
 
alignment_score_t & score (seq_len_t row, seq_len_t col)
 

Static Public Attributes

static const seq_len_t default_nrows = 80
 
static const seq_len_t default_ncols = 20
 
The documentation for this struct was generated from the following file:
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