Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
ymir::EMAlgorithm Member List

This is the complete list of members for ymir::EMAlgorithm, including all inherited members.

filterOut(const ClonesetView &rep_nonc, const MAAGRepertoire &maag_rep, vector< prob_t > &prob_vec, vector< bool > &good_clonotypes, size_t &removed, size_t &zero_prob, size_t &no_alignments) const (defined in ymir::StatisticalInferenceAlgorithm)ymir::StatisticalInferenceAlgorithminline
statisticalInference(const ClonesetView &repertoire, ProbabilisticAssemblingModel &model, const AlgorithmParameters &algo_param=AlgorithmParameters().set("niter", 10).set("sample", 50000), ErrorMode error_mode=NO_ERRORS) const (defined in ymir::EMAlgorithm)ymir::EMAlgorithminlinevirtual
updateModel(ProbabilisticAssemblingModel &model, ModelParameterVector &new_param_vec, MAAGRepertoire &maag_rep, vector< prob_t > &prob_vec, prob_t &prev_ll, size_t removed, ErrorMode error_mode) const (defined in ymir::EMAlgorithm)ymir::EMAlgorithminlineprotected
updateTempVec(MAAGForwardBackwardAlgorithm &fb, MAAG &maag, ModelParameterVector &new_param_vec, ErrorMode error_mode) const (defined in ymir::EMAlgorithm)ymir::EMAlgorithminlineprotected
~StatisticalInferenceAlgorithm() (defined in ymir::StatisticalInferenceAlgorithm)ymir::StatisticalInferenceAlgorithminlinevirtual
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