Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
Public Member Functions | Protected Attributes | List of all members
ymir::ForwardBackwardAlgorithm Class Referenceabstract
Inheritance diagram for ymir::ForwardBackwardAlgorithm:
ymir::VD2JForwardBackward ymir::VDJForwardBackward ymir::VJForwardBackward

Public Member Functions

virtual void infer (const MAAG &maag)=0
 
event_pair_t nextEvent ()
 
bool is_empty ()
 
bool status () const
 
prob_t fullProbability () const
 
prob_t bfullProbability () const
 
const vector< event_pair_t > & event_pairs () const
 
prob_t * insertion_probs () const
 

Protected Attributes

pProbMMC _forward_acc
 
pProbMMC _backward_acc
 
bool _status
 
vector< event_pair_t > _pairs
 
size_t _pairs_i
 
prob_t _full_prob
 
prob_t _back_full_prob
 

Member Data Documentation

bool ymir::ForwardBackwardAlgorithm::_status
protected

Temporary MMC for storing forward and backward probabilities correspondingly.


The documentation for this class was generated from the following file: