ymir::GappedAlignment Member List

This is the complete list of members for ymir::GappedAlignment, including all inherited members.

_events (defined in ymir::AlignmentBase)	ymir::AlignmentBase	protected
_len (defined in ymir::AlignmentBase)	ymir::AlignmentBase	protected
_pattern_start (defined in ymir::AlignmentBase)	ymir::AlignmentBase	protected
_text_start (defined in ymir::AlignmentBase)	ymir::AlignmentBase	protected
AlignmentBase(seq_len_t p_start, seq_len_t t_start, events_storage_t &events) (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inline
AlignmentBase() (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inlineprotected
AlignmentBase(seq_len_t p_start, seq_len_t t_start, seq_len_t len) (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inlineprotected
events_storage_t typedef (defined in ymir::AlignmentBase)	ymir::AlignmentBase
GappedAlignment(seq_len_t p_start, seq_len_t t_start, events_storage_t &events) (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inline
GappedAlignment() (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inlineprotected
isDel(seq_len_t i) const (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inline
isIns(seq_len_t i) const (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inline
isMatch(seq_len_t i) const (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inline
isMismatch(seq_len_t i) const (defined in ymir::GappedAlignment)	ymir::GappedAlignment	inline
pattern_start() const (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inline
size() const (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inline
text_start() const (defined in ymir::AlignmentBase)	ymir::AlignmentBase	inline