ymir::GappedAlignment Struct Reference

Inheritance diagram for ymir::GappedAlignment:

Public Member Functions
	GappedAlignment (seq_len_t p_start, seq_len_t t_start, events_storage_t &events)
bool	isMatch (seq_len_t i) const
bool	isMismatch (seq_len_t i) const
bool	isIns (seq_len_t i) const
bool	isDel (seq_len_t i) const
Public Member Functions inherited from ymir::AlignmentBase
	AlignmentBase (seq_len_t p_start, seq_len_t t_start, events_storage_t &events)
seq_len_t	pattern_start () const
seq_len_t	text_start () const
seq_len_t	size () const

Additional Inherited Members
Public Types inherited from ymir::AlignmentBase
typedef std::vector< bool >	events_storage_t
Protected Member Functions inherited from ymir::AlignmentBase
	AlignmentBase (seq_len_t p_start, seq_len_t t_start, seq_len_t len)
Protected Attributes inherited from ymir::AlignmentBase
seq_len_t	_pattern_start
seq_len_t	_text_start
seq_len_t	_len
events_storage_t	_events

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The documentation for this struct was generated from the following file:

• Ymir/src/alignment.h