Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
ymir::NoGapAlignment Member List

This is the complete list of members for ymir::NoGapAlignment, including all inherited members.

_events (defined in ymir::AlignmentBase)ymir::AlignmentBaseprotected
_len (defined in ymir::AlignmentBase)ymir::AlignmentBaseprotected
_pattern_start (defined in ymir::AlignmentBase)ymir::AlignmentBaseprotected
_text_start (defined in ymir::AlignmentBase)ymir::AlignmentBaseprotected
AlignmentBase(seq_len_t p_start, seq_len_t t_start, events_storage_t &events) (defined in ymir::AlignmentBase)ymir::AlignmentBaseinline
AlignmentBase() (defined in ymir::AlignmentBase)ymir::AlignmentBaseinlineprotected
AlignmentBase(seq_len_t p_start, seq_len_t t_start, seq_len_t len) (defined in ymir::AlignmentBase)ymir::AlignmentBaseinlineprotected
events_storage_t typedef (defined in ymir::AlignmentBase)ymir::AlignmentBase
isMismatch(seq_len_t i) const (defined in ymir::NoGapAlignment)ymir::NoGapAlignmentinline
NoGapAlignment(seq_len_t p_start, seq_len_t t_start, events_storage_t &events) (defined in ymir::NoGapAlignment)ymir::NoGapAlignmentinline
NoGapAlignment(seq_len_t p_start, seq_len_t t_start, seq_len_t len) (defined in ymir::NoGapAlignment)ymir::NoGapAlignmentinline
NoGapAlignment() (defined in ymir::NoGapAlignment)ymir::NoGapAlignmentinlineprotected
pattern_start() const (defined in ymir::AlignmentBase)ymir::AlignmentBaseinline
size() const (defined in ymir::AlignmentBase)ymir::AlignmentBaseinline
text_start() const (defined in ymir::AlignmentBase)ymir::AlignmentBaseinline