Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
Public Member Functions | List of all members
ymir::NoGapAlignment Struct Reference
Inheritance diagram for ymir::NoGapAlignment:
ymir::AlignmentBase

Public Member Functions

 NoGapAlignment (seq_len_t p_start, seq_len_t t_start, events_storage_t &events)
 
 NoGapAlignment (seq_len_t p_start, seq_len_t t_start, seq_len_t len)
 
bool isMismatch (seq_len_t i) const
 
- Public Member Functions inherited from ymir::AlignmentBase
 AlignmentBase (seq_len_t p_start, seq_len_t t_start, events_storage_t &events)
 
seq_len_t pattern_start () const
 
seq_len_t text_start () const
 
seq_len_t size () const
 

Additional Inherited Members

- Public Types inherited from ymir::AlignmentBase
typedef std::vector< bool > events_storage_t
 
- Protected Member Functions inherited from ymir::AlignmentBase
 AlignmentBase (seq_len_t p_start, seq_len_t t_start, seq_len_t len)
 
- Protected Attributes inherited from ymir::AlignmentBase
seq_len_t _pattern_start
 
seq_len_t _text_start
 
seq_len_t _len
 
events_storage_t _events
 

The documentation for this struct was generated from the following file: