Ymir  .9
Fast\C++toolforcomputationofassemblingprobabilities,statisticalinferenceofassemblingstatisticalmodelandgenerationofartificialsequencesofT-cellreceptorsdata.
Public Member Functions | List of all members
ymir::TDVector Struct Reference

Vector of gene segments. More...

#include <textdata.h>

Inheritance diagram for ymir::TDVector:
ymir::AbstractTDContainer

Public Member Functions

 TDVector (bool skip_first_column=true, prob_t laplace=0, const std::string &filepath="")
 
bool read (std::string &err_message)
 
bool write (const std::string &filepath)
 
- Public Member Functions inherited from ymir::AbstractTDContainer
 AbstractTDContainer (CONTAINER_TYPE ctype, bool skip_first_column, prob_t laplace, const std::string &filepath)
 
virtual void addDataValue (prob_t value, size_t i=0)
 
virtual void addDataVector (const std::vector< prob_t > &vec)
 
virtual void addDataVector (std::vector< prob_t >::const_iterator start, std::vector< prob_t >::const_iterator end)
 
prob_t laplace () const
 
seg_index_t n_rows () const
 
seg_index_t n_columns () const
 
void addRowName (const std::string &name)
 
void addColumnName (const std::string &name)
 
void addMetadata (seq_len_t data)
 
const std::vector< std::string > & row_names () const
 
const std::vector< std::string > & column_names () const
 
seq_len_t metadata (size_t i) const
 
const std::vector< prob_t > & data (size_t i) const
 
CONTAINER_TYPE type () const
 
bool file_exists () const
 

Additional Inherited Members

- Protected Attributes inherited from ymir::AbstractTDContainer
std::vector< std::vector< prob_t > > _data
 
std::vector< std::string > _colnames
 
std::vector< std::string > _rownames
 
prob_t _laplace
 
bool _skip_first_column
 
bool _file_exists
 
CONTAINER_TYPE _type
 
std::vector< seq_len_t > _metadata
 
std::string _filepath
 

Detailed Description

Vector of gene segments.


The documentation for this struct was generated from the following file: