List of std::vectors for deletions and insertions. More...

#include <textdata.h>

Inheritance diagram for ymir::TDVectorList:

Public Member Functions
	TDVectorList (bool skip_first_column=true, prob_t laplace=0, const std::string &filepath="")

bool	read (std::string &err_message)

bool	write (const std::string &filepath)

Public Member Functions inherited from ymir::AbstractTDContainer
	AbstractTDContainer (CONTAINER_TYPE ctype, bool skip_first_column, prob_t laplace, const std::string &filepath)

virtual void	addDataValue (prob_t value, size_t i=0)

virtual void	addDataVector (const std::vector< prob_t > &vec)

virtual void	addDataVector (std::vector< prob_t >::const_iterator start, std::vector< prob_t >::const_iterator end)

prob_t	laplace () const

seg_index_t	n_rows () const

seg_index_t	n_columns () const

void	addRowName (const std::string &name)

void	addColumnName (const std::string &name)

void	addMetadata (seq_len_t data)

const std::vector< std::string > &	row_names () const

const std::vector< std::string > &	column_names () const

seq_len_t	metadata (size_t i) const

const std::vector< prob_t > &	data (size_t i) const

CONTAINER_TYPE	type () const

bool	file_exists () const

Additional Inherited Members
Protected Attributes inherited from ymir::AbstractTDContainer
std::vector< std::vector< prob_t > >	_data

std::vector< std::string >	_colnames

std::vector< std::string >	_rownames

prob_t	_laplace

bool	_skip_first_column

bool	_file_exists

CONTAINER_TYPE	_type

std::vector< seq_len_t >	_metadata

std::string	_filepath

Detailed Description

List of std::vectors for deletions and insertions.

The documentation for this struct was generated from the following file:

Public Member Functions