ymir::VDJAlignmentEventScore Struct Reference

Public Member Functions
	VDJAlignmentEventScore (const AlignmentEventScore &v, const AlignmentEventScore &j)
	VDJAlignmentEventScore (const AlignmentEventScore &v, const AlignmentEventScore &d, const AlignmentEventScore &j)

Public Attributes
AlignmentEventScore	v_score
AlignmentEventScore	d_score
AlignmentEventScore	j_score

Static Public Attributes
static constexpr const alignment_score_t	default_v_match = 3
static constexpr const alignment_score_t	default_v_mism = -2.5
static constexpr const alignment_score_t	default_v_indel = -3
static constexpr const alignment_score_t	default_d_match = 2
static constexpr const alignment_score_t	default_d_mism = -3
static constexpr const alignment_score_t	default_d_indel = -3
static constexpr const alignment_score_t	default_j_match = 3
static constexpr const alignment_score_t	default_j_mism = -2.5
static constexpr const alignment_score_t	default_j_indel = -3

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The documentation for this struct was generated from the following file:

• Ymir/src/aligner_parameters.h